Software
Structure comparison and analysis
- CAD-score: contact area-based comparison of structures and interfaces of proteins, nucleic acids and their complexes
- Voroprot: an interactive tool for the analysis and visualization of complex geometric features of protein structure
- Voronota: a fast and reliable tool for computing the vertices of the Voronoi diagram of atomic balls
- VoroMQA: assessment of protein structure quality using interatomic contact areas
- VoroIF-GNN: assessment of protein-protein interface accuracy in structures of protein assemblies (part of Voronota-JS)
- FTDMP: a software system for running docking experiments and scoring/ranking multimeric models
- VoroContacts: a tool for the analysis of interatomic contacts in macromolecular structures
- PPI3D: search, analyze and model protein-protein interactions in the context of 3D structures
Sequence search and analysis
- COMER web server for protein analysis by homology
- COMER: protein remote homology search
- PDEXK server for detection of new protein families from the PDEXK superfamily
- COMA: a method for detection of distant evolutionary relationships
- Re-searcher: a system for recurrent searches of homologs in protein sequence databases
- The PSI-BLAST Intermediate Sequence Search tool: PSI-BLAST-ISS
Other